Sample Type
| Value Name | Definition | Source [Link] | Attribute Codes |
|---|---|---|---|
| Amniotic fluid | A specimen that is derived from amniotic fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Ascites fluid | The serous fluid which accumulates in the peritoneal cavity in ascites. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Bile | A specimen that is derived from bile. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Body cavity fluid | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Bone | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Bone marrow aspirate | Aspirate from bone marrow. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Bone marrow plasma | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Bone marrow, whole | A specimen that is derived from bone marrow. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Breast milk | A specimen that is derived from milk. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Bronchoalveolar lavage | Group of biomaterials present in the bronchial aveolar space of an organism which are collected through lavage including the reagents used to for the lavage process, organisms, cells, and cellular secretions present in the bronchial aveolar space. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Buffy Coat | A processed specimen which is the output of a density gradient centrifugation of an anticoagulated blood specimen that contains most of the white blood cells and platelets. | OBIB | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Cancer cell lines | An immortal cell line derived from a transformed cell that was part of a malignant tumor. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Cerebrospinal fluid | A specimen that is derived from cerbrospinal fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Cord blood | A specimen that is derived from some umbilical cord blood | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Dental pulp | The part in the center of a tooth made up of living soft tissue and cells called odontoblasts | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-142 |
| DNA | The output of an extraction process in which DNA molecules are purified in order to exclude DNA from organellas. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Embryo | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Entire body organ | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Faeces | A specimen that is derived from feces. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Fetal tissue | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Fibroblasts | A connective tissue cell which secretes an extracellular matrix rich in collagen and other macromolecules. Flattened and irregular in outline with branching processes; appear fusiform or spindle-shaped. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Food specimen | A processed specimen that is the output of a fixation process. | OBIB | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Gas, exhaled (=breath) | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Gastric fluid | A specimen that is derived from digestive system fluid or secretion. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Hair | A specimen that is derived from hair. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Immortalized cell lines | A cultured cell population that represents a genetically stable and homogenous population of cultured cells that shares a common propagation history (i.e. has been successively passaged together in culture). | CLO | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Isolated microbes | A specific individual microbe and its genetically identical progeny separated on a single occasion from a sample taken from a host or culture system. | IDO | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Isolated or enriched exosomes | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Isolated Tumor Cell (neoplastic cell) | An abnormal cell exhibiting dysregulation of cell proliferation or programmed cell death and capable of forming a neoplasm, an aggregate of cells in the form of a tumor mass or an excess number of abnormal cells (liquid tumor) within an organism. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Menstrual blood | The discharged blood from the uterus during the reproductive years. The discharge occurs approximately once a month. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Nail | A horn-like keratin structure covering the dorsal aspect of the terminal phalanges of fingers and toes. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Nasal washing | A biospecimen collected from the nasal passages by washing. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Organoids | A three dimensional mass comprised of a cultured cell or tissue sample that resembles an in vivo tissue or organ. Organoids are grown in vitro from a combination of cells or tissue fragments cultured in medium containing a variety of biochemical factors. | NCIT | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Pericardial fluid | A specimen that is derived from pericardial fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Peripheral blood mononuclear cells (PBMC) | A leukocyte with a single non-segmented nucleus in the mature form found in the circulatory pool of blood. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Placenta | A specimen that is derived from placenta. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Plasma | a material entity which corresponds to the FLUIDS component of blood, in which the blood cells are suspended. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Pleural fluid | A specimen that is derived from pleural fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Post-mortem tissue | A specimen that was taken from a dead organism | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Primary cells | A cell taken directly from a living organism, which is not immortalized. | BTO | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Proteins | An amino acid chain that is produced de novo by ribosome-mediated translation of a genetically-encoded mRNA, and any derivatives thereof. | PR | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Red blood cells | A red blood cell. In mammals, mature erythrocytes are biconcave disks containing hemoglobin whose function is to transport oxygen. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| RNA | an extract which is the output of an extraction process in which RNA molecules are isolated from a specimen. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Saliva | A specimen that is derived from saliva. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Semen | A specimen that is derived from some semen | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Serum | A material entity which derives from blood and corresponds to blood plasma without fibrinogen or the other clotting factors. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Specimen from environment | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Sputum | A specimen that is derived from sputum. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Stem cells (and iPS cells) | A relatively undifferentiated cell that retains the ability to divide and proliferate throughout life to provide progenitor cells that can differentiate into specialized cells. | CL | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Swab | A specimen that is stored on a swab as the output of a collecting specimen with swab process. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Sweat | A specimen that is derived from sweat. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Synovial fluid | A specimen that is derived from synovial fluid. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Tears | Aqueous substance secreted by the lacrimal gland. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Teeth | Skeletal element within the mouth (or in some species, upper part of the digestive tract) that is composed of dentine and is used in procuring or masticating food. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Tissue (fixed) | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Tissue (fresh frozen) | A specimen that has been frozen in order to store it. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Umbilical cord | The connecting cord from the developing embryo to the placenta. | UBERON | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Urine | a portion of urine collected from an organism | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Urine Sediment | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Vitreous fluid | A specimen that is derived from vireous humor. | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Whole blood | A material entity derived from a portion of blood collected from an organism | OBI | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |
| Whole blood, dried (e.g. Guthrie cards) | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 | ||
| Other | Any other type of material taken from a biological entity, e.g. amniotic fluid, cerebrospinal fluid (CSV), mitochondrial RNA. | MIABIS-SAMPLE-02, MIABIS-COLLECTION-14 |